PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g33557.2.p
Common NameBRADI_4g33557, LOC100828022
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 393aa    MW: 42302.2 Da    PI: 7.2924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g33557.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05229248120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C k+F+r  n++ H+
  Bradi4g33557.2.p 229 FSCPVCFKTFNRYNNMQMHM 248
                       89*****************9 PP

2zf-C2H211.10.0012315335323
                       ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                       C  Cgk F  k + ++H +++
  Bradi4g33557.2.p 315 CRRCGKAFAVKGDWRTHEKNC 335
                       *****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64229256IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-6229248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SuperFamilySSF576673.04E-6295333No hitNo description
Gene3DG3DSA:3.30.160.604.2E-5300333IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538313333IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MENPYTTFLK NYHQQTHRRP RYYNCPATPT PSPAPPPPLS AYSSLFFPPP PGPPPAAPAP  60
PSPPLREALP LLSLAPAASS HVSRERRPGP DSDDDEADED EAPGPTSSSS NQRREGARRL  120
FADLNSKAAD DDDDPMDVER GGSMAAEGPN VTVALRIGLP SAAAADLISG ISSSAAAATA  180
SSRDEEEEEE DGGGVAAALG FASAAIGRLN KGQYWIPTPT QILIGPTQFS CPVCFKTFNR  240
YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCRNNVDHPR AKPLKDFRTL  300
QTHYKRKHGL KPFLCRRCGK AFAVKGDWRT HEKNCGKLWY CLCGSEFKHK RSLKDHARAF  360
GRGHGAIGGG GLDDDDDCGA VSDVDHDDGA GV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568140.0AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576670.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-122ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0Q3HR760.0A0A0Q3HR76_BRADI; Uncharacterized protein
STRINGBRADI4G33557.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-104C2H2 family protein